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|“||Cogs need someplace to congregate and hold their tediously evil board meetings, and those places are the Cog HQs. Look on the Toontown Map and you will see a Cog HQ that has sprung up in each corner of the world. These dreary places are extremely dangerous, and only Toons with high Laff should venture inside! In addition to the regular Cogs, there are Skelecogs, Goons, Version 2.0s, and the dreadful VPs.||”|
–Toontown Player's Guide
Cog headquarters are areas of Toontown that are permanently controlled by cogs. These areas are usually more difficult and dangerous compared to other locations in Toontown. As toons progress further into the game they will be assigned Toontasks related to the four cog headquarters.
- Main article: Sellbot Headquarters
Sellbot Headquarters (sometimes abbreviated SBHQ) was released on December 19, 2003. The theme is an industrial wasteland. Its most important areas are the Sellbot Factory and Sellbot Towers. Cogs ranging from Cold Callers to Two-Faces are in its courtyard. It is controlled by the Vice President and the Sellbots.
- Main article: Cashbot Headquarters
Cashbot Headquarters (sometimes abbreviated CBHQ) was released on February 17, 2005. The theme is a gigantic train station. It has three mints and a vault. Cogs ranging from Tightwads to Money Bags are in the main area, the train yard. It is controlled by the Chief Financial Officer and the Cashbots.
- Main article: Lawbot Headquarters
Lawbot Headquarters (sometimes abbreviated LBHQ) was released on April 25, 2006. The theme is a clean marble plaza in a city. It has the District Attorney's office and the courthouse. Cogs ranging from Ambulance Chasers to Spin Doctors are in the courtyard. It is controlled by the Chief Justice and the Lawbots.
- Main article: Bossbot Headquarters
Bossbot Headquarters (sometimes abbreviated BBHQ) was released on March 6, 2008. Its theme is a country club. It has three cog golf courses and the Bossbot Clubhouse. Unlike the other cog headquarters, there are no cogs in the main area, and there are no goons in the entire headquarters. It is controlled by the Chief Executive Officer and the Bossbots.
- Cog headquarters are the only places where skelecogs and goons can be found.
- The original idea for cog headquarters was one large headquarters containing factories which were run by each department. There was going to be a "Bossbot Arm Factory", which was hinted with an early picture.